Signal Explorer - Frequently Asked Questions
- What genome build is used?
All data are currently using GRCh38/hg38. - Can I change the population reference panel?
Currently only the 1000G reference is supported. - Why use the ‘Y-axis maximum’ option?
By default, each individual plot’s Y axis is defined by the data for that study. There may be several occasions, however, when it is beneficial to have all plots to have the same Y axis limit, for example: to show P-values differences between two studies. - Can I save the plots from multiple studies at once?
Currently this functionality is not supported. However, a screen shot may help. - Why is the INFO score for most SNPs in some studies 1?
When variants are taken from whole genome sequencing studies (e.g. GTEx eQTLs) very few variants are imputed, and as such the info score is 1.